Flagellin-elicited adaptive immunity suppresses flagellated microbiota and vaccinates against chronic inflammatory diseases.

Tran HQ, Ley RE, Gewirtz AT and Chassaing B.

Nature Communications. 

10(1):5650. 

(2019). 

DOI: https://doi.org/10.1038/s41467-019-13538-y

Interactions between the gut microbiome and mucosal immunoglobulins A, M, and G in the developing infant gut.

Janzon A, Goodrich JK, Koren O, TEDDY Study Group, Waters JL and Ley RE.

mSystems. 

4(6):e00612-19. 

(2019). 

DOI: https://doi.org/10.1128/msystems.00612-19

The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.

Waters JL and Ley RE.

BMC Biology. 

17(1):83. 

(2019). 

DOI: https://doi.org/10.1186/s12915-019-0699-4

Expanding the scope and scale of microbiome research.

Knight R, Ley RE, Raes J and Grice EA.

Genome Biology. 

20(1):191. 

(2019). 

DOI: https://doi.org/10.1186/s13059-019-1804-2

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Bolyen E, Rideout JR, Dillon MR et al.

Nature Biotechnology. 

37(8):852-857. 

(2019). 

DOI: https://doi.org/10.1038/s41587-019-0209-9

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades.

Youngblut ND, Reischer GH, Walters W, Schuster N, Walzer C, Stalder G, Ley RE and Farnleitner AH.

Nature Communications. 

10(1):2200. 

(2019). 

DOI: https://doi.org/10.1038/s41467-019-10191-3

Age- and sex-dependent patterns of gut microbial diversity in human adults.

De la Cuesta Zuluaga J, Kelley ST, Chen Y, Escobar JS, Mueller NT, Ley RE, McDonald D, Huang S, Swafford AD, Knight R and Thackray VG.

mSystems. 

4(4):e00261-19. 

(2019). 

DOI: https://doi.org/10.1128/msystems.00261-19

The African Microbiome: Clues of human adaptation and population history.

Schmidt VT and Ley RE.

Kems Verlag, Tübingen, Germany. 

In book: Modern Human Origins and Dispersal, Sahle Y., Reyes-Centeno H., and Bentz C. (Eds.). 

(2019). 

Human salivary amylase gene copy number impacts oral and gut microbiomes.

Poole AC, Goodrich JK, Youngblut ND, Luque GG, Ruaud A, Sutter JL, Waters JL, Shi Q, ElHadidi M, Johnson LM, Bar HY, Huson DH, Booth JG and Ley RE.

Cell Host & Microbe. 

25(4):553-564.e7. 

(2019). 

DOI: https://doi.org/10.1016/j.chom.2019.03.001

Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins.

Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector T, Bell JT, Youngblut ND, Hewson I, Reyes A and Ley RE.

Cell Host & Microbe. 

25(2):261-272.e5. 

(2019). 

DOI: https://doi.org/10.1016/j.chom.2019.01.019

Murine methyl donor deficiency impairs early growth in association with dysmorphic small intestinal crypts and reduced gut microbial diversity.

Alves da Silva AV, Oliveira SB, DiRienzi SC, Dehan LM, Rood JK, Carreira VS, Le H, Maier EA, Betz KJ, Aihara E, Ley RE, Preidis GE, Shen L and Moore SR.

Current Developments in Nutrition. 

3(1);nzy070 . 

(2019). 

DOI: https://doi.org/10.1093/cdn/nzy070