Former graduate student Albane Ruaud recently saw her machine learning tool published in PLoS Comp Bio:

Ruaud A, Pfister N, Ley RE, Youngblut ND. Interpreting tree ensemble machine learning models with endoR. PLoS Computational Biology Dec 14;18(12):e1010714. (2022).

Use endoR to figure out how machine learning tools are making the decisions they are! And see the code here: https://github.com/aruaud/endoR